ATOM Documentation

docs/
├── INDEX.md                           # NEW: Complete documentation index
├── core/                              # Core architecture & standards
│   ├── ARCHITECTURE.md
│   ├── BRAIN_SYSTEMS.md
│   ├── AI world model
│   ├── API_RESPONSE_STANDARD.md
│   ├── AUTH_ERROR_STANDARD.md
│   ├── DATABASE_QUERY_STANDARD.md
│   ├── EMAIL_SERVICE_STANDARD.md
│   ├── FRONTEND_STATE_STANDARD.md
│   └── BILLING_ARCHITECTURE.md
│
├── development/                        # Development guides
│   ├── DEVELOPMENT_STANDARDS.md
│   ├── SDLC_AGENTS.md
│   └── setup/
│       └── local-setup.md
│
├── deployment/                         # Production deployment
│   ├── PRODUCTION_RUNBOOK.md
│   ├── DEPLOYMENT_GUIDE.md
│   ├── DEPLOYMENT_VERIFICATION_REPORT.md
│   ├── FLY_TROUBLESHOOTING.md
│   ├── production-setup-guide.md
│   ├── aws-ses-setup.md
│   ├── stripe-setup-guide.md
│   ├── deploy-aws.md
│   ├── eventbridge-setup.md
│   ├── desktop-fork-guide.md
│   ├── DESKTOP_HOSTING_SETUP.md
│   └── SCALING_SYSTEM.md
│
├── integrations/                       # Integration system
│   ├── INTEGRATIONS.md
│   ├── INTEGRATION_CREDENTIALS.md
│   ├── integrations-list.md
│   ├── marketplace-quickstart.md
│   ├── marketplace-authentication.md
│   ├── public-marketplace-api.md
│   ├── AGENT_INTEGRATION_GUIDE.md
│   ├── CANVAS_API_REFERENCE.md
│   ├── WORKFLOW_BUILDER_USER_GUIDE.md
│   ├── VISUAL_BUILDER_INTEGRATION.md
│   ├── PACKAGE_MANAGEMENT.md
│   ├── MEDIA_INTEGRATION.md
│   ├── CREATIVE_TOOLS_INTEGRATION.md
│   ├── TELEGRAM_INTEGRATION_TESTING.md
│   └── PERSONAL_EDITION_PARITY.md
│
├── api/                               # API documentation
│   ├── EXTERNAL_API.md
│   ├── EXTERNAL_API_EXAMPLES.md
│   └── api-development-guidelines.md
│
├── testing/                           # Testing guides
│   ├── TESTING_COVERAGE_REPORT.md
│   ├── TEST_COVERAGE_ROADMAP.md
│   ├── coverage-monitoring.md
│   ├── CI-CD-COVERAGE-ENFORCEMENT.md
│   └── e2e/
│       └── E2E_TESTING_GUIDE.md
│
├── user-guides/                       # User documentation
│   ├── PERSONAL-EDITION-INSTALL.md
│   ├── PERSONAL-EDITION-EXAMPLES.md
│   └── smarthome/
│       ├── INTEGRATION_GUIDE.md
│       ├── AUTOMATION_GUIDE.md
│       ├── VOICE_CONTROL.md
│       └── TROUBLESHOOTING.md
│
├── architecture/                       # Architecture documentation
│   ├── ARCHITECTURAL_ECONOMICS.md
│   ├── DATA_FLOW_ARCHITECTURE.md
│   ├── postgres-graph-architecture.md
│   ├── v2-graph-architecture.md
│   └── graph-storage-comparison.md
│
├── security/                           # Security documentation
│   └── overview.md
│
├── archive/                           # Archived documentation
│   ├── README.md                      # Archive index
│   ├── legacy-sprints/               # Sprint reports
│   ├── legacy-testing/               # Test reports
│   ├── legacy-qa/                    # QA documents
│   ├── legacy-implementation/        # Implementation docs
│   └── root-legacy/                  # Root level archives
│
├── accessibility/                      # Accessibility docs
├── llm-orchestration/                # LLM orchestration
└── marketing/                          # Archived marketing docs